The Doctoral Student Hub is your central resource for navigating the Bioengineering Ph.D. program. Organized by year, this guide outlines the major academic milestones, required submissions, deadlines, and resources you’ll need as you progress toward your degree. While every student’s timeline is unique, most students complete the program in five to six years.

Use the sections below to understand what to expect during each stage of your doctoral journey. Expand each section for detailed requirements, forms, and submission instructions.

Jump to the Section You Need:

Year 1  |  Year 2  |  Year 3   |  Years 4 – Completion
Registration Forms  |  Meeting Scheduling Tools

Year 1

Build Your Foundation

Most students enter the program already matched with a research advisor and begin research during the fall semester. Some students complete research rotations before selecting a permanent advisor by the spring semester.

The primary milestone during your first year is the Qualifying Evaluation, which should be completed during the summer after your first year and no later than November of your second year. The Qualifying Evaluation assesses your readiness to continue toward doctoral research and fulfills your first annual committee meeting requirement.

Timeline

Over the summer of your first year and later than November of your second year.

What You Need to Do

The student should record and submit PhD milestones through the  BP logix portal. To access the appropriate form for the proposal, choose – Penn Graduate Forms,” select “Available forms,” then choose and complete the “Qualifying Examination” form by simply entering the date you successfully completed your qualifying exam and then click submit. This will ensure that your official school record is updated.

Faculty Responsibilities

Following the exam, the student’s committee chair should complete the Qualifying Evaluation of Exam and Overall Recommendations Form. The qualifying exam satisfies the student’s first annual committee meeting.

Forms & Resources

Year 2

Establish Your Dissertation Committee & Annual Review

During your second year, you’ll work with your advisor to assemble your dissertation committee. Your committee will serve as a source of mentorship and scholarly guidance throughout the remainder of your doctoral studies while helping evaluate your research progress.

This is also the time to continue refining your research direction and preparing for your thesis proposal.

Timeline

Beginning after your Qualifying Evaluation and continuing through graduation, you are expected to meet with your faculty committee annually to review your research progress, receive feedback, and discuss goals for the coming year.

Submission Deadline

The Annual Ph.D. Committee Meeting Progress Report may be submitted any time after your committee meeting but must be received no later than June 1 each year.

What You Need to Do

Each year, you are responsible for:

  • Scheduling and holding your annual committee meeting.
  • Preparing an Annual Ph.D. Committee Meeting Progress Report.
  • Obtaining signatures from your committee members.
  • Submitting the completed report to the Graduate Group Chair
  • Completing an annual Individual Development Plan (IDP).

Important Notes

  • Your Qualifying Evaluation satisfies your first annual committee meeting requirement.
  • If your thesis proposal is delayed beyond the expected timeline, you must continue holding annual committee meetings with your mentoring committee until your proposal is completed.
  • Annual committee meetings are required each year until you successfully defend your dissertation.

Forms & Resources

Timeline

As you progress in your research during this phase.

What You Need to Do

As you progress in your research and writing, note that/be aware of the Dissertation Formatting outlined by the University on the Penn Provost PhD Students page.

Forms & Resources

Dissertation Committee Assembly

The below tips on how to assemble your thesis committee have been modified from https://www.servicescape.com/blog/how-to-assemble-your-dissertation-committee.

The committee shall typically be composed of 3-4 faculty members (in addition to the advisor), recommended by the advisor, and approved by the Bioengineering Graduate Group Chair. In special circumstances, an additional member may be added, subject to the approval of the Graduate Group Chair. Appointment of committee members who are not part of Penn faculty requires details of their full title, affiliation and a short biographical sketch.

  • The dissertation advisor is an ex officio member of the committee.
  • Three committee members must have full-time Standing or Research faculty appointments at Penn.
  • Two committee members must be members of the Bioengineering Graduate Group.
  • One committee member must hold a doctorate in an Engineering discipline or a highly quantitative subject (e.g. math, physics), OR is a Primary Faculty member in a School of Engineering and Applied Science Department.
  • One member (who meets the criteria listed below) is recommended as Chair by the advisor, and must be approved by the Bioengineering Graduate Group Chair

  • Ask your advisor if they have any recommendations that you should consider for your committee. Your advisor is most likely already invested in you and your research topic, and aside from you, probably has the best understanding of your dissertation topic and your ultimate goals. Your advisor will hopefully have established strong relationships with other faculty members in your department, so he or she should have valuable suggestions for you to consider. It will be worthwhile to consider people that you know will work well with your advisor. But, it is your committee, not your advisor’s.
  • Ask your fellow graduate students if they can recommend any potential candidates for your dissertation committee. If you have friends who have already selected their dissertation committee, try to learn from their experiences. Ask how they selected their committee members and if they encountered anyone that might be a good fit for you. Friends can also give you tips if a favorite faculty member is going on sabbatical soon or is too busy to serve on any additional committees.

  • Professors that you respect and value
  • Faculty members who have shaped your understanding of your subject matter
  • People who will broaden your networking circles: If you plan to seek a career in industry after earning your Ph.D., try to select at least one committee member with extensive contacts in your preferred industry (if your department’s guidelines allow external members on your committee). Additionally, if you choose well-connected committee members, they might be able to introduce you to future collaborators or suggest research areas you have not yet considered.
  • People with strong communication skills
  • People who will challenge and inspire you

As you research and write your dissertation, you will seek feedback from your advisor frequently, and you will get some good old-fashioned practice at this during the committee selection process. In Step 2, your advisor recommended a handful of candidates for your committee. Since then, you have added more names to your list, so ask your advisor for feedback on your complete choices. Here are some questions you might want to consider asking:

  • Is there anyone on the list who is difficult to work with and might impede your dissertation progress?
  • Does your list include someone who is already serving on multiple committees and won’t be able to give you the time and attention you deserve?
  • Are there any knowledge gaps in your list? In other words, have you included two or three people from the same specialty, which means you probably overlooked including a candidate from another important sector?
  • Does your advisor possess personal or professional information that might lead you to exclude any candidates? Don’t be nosy here—you don’t need to know the reason, just trust your advisor if he or she tells you that someone you should probably remove someone from your list.

Email your preferred candidates a brief summary of your research topic and ask if you can schedule an appointment to discuss the possibility of them serving on your dissertation committee. If candidates don’t reply to your email within a reasonable time frame, assume that they are too busy to serve on a dissertation committee and remove them from your candidate list. Similarly, if a candidate does not have any availability to meet with you during your selected time frame, that candidate is likely overbooked. You might want to take this as a sign and scratch this person off your list.

Send a separate email to each potential member and highlight a few reasons that you think he or she will be an ideal choice for your dissertation committee. Explain that you are currently in the process of gathering your dissertation committee and ask candidates to give you an answer by a (reasonable) deadline.

If you decided after a meeting that a candidate was not a good fit for your committee, send a follow up email and thank the person for meeting with you. After expressing your appreciation, state that you have filled all positions on your dissertation committee at this time. If applicable, you might consider asking if you can consult him or her if you have questions while working on your dissertation.

Years 3

Dissertation Proposal & Annual Review

Students are expected to complete their dissertation proposal during the fall semester of the third year. The proposal outlines your planned dissertation research and is presented to your dissertation committee for evaluation.

Upon successful completion of the proposal, you advance to Ph.D. candidacy.

After advancing to candidacy, students meet with their dissertation committee annually to discuss research progress, receive feedback, and establish goals for the coming year.

Timeline

Students are expected to complete their dissertation proposal during the fall semester of Year 3.

What You Need to Do

  • Review “Advancing to Ph.D. Candidacy: Submission and Defense of the Dissertation Proposal” in the Doctoral Handbook.
  • Formally register for your dissertation proposal with the Dissertation Proposal Registration Form
  • Schedule your proposal with your dissertation committee.
  • Enter the proposal date in the BP Logix portal after your proposal has been completed.
  • Present your proposed dissertation research.

Faculty Responsibilities

Following a successful proposal, the committee chair will submit the Acceptance of Proposal Form.

Important Notes

  • Successful completion of the thesis proposal advances you to Ph.D. candidacy.

Forms & Resources

Timeline

Students are expected to complete their thesis proposal during the fall semester of Year 3.

What You & Your Advisor
Need to Do

If the student and advisor need an extension of this deadline, they must co-submit in writing an extension request to the Graduate Group Chair with a timeline for when the proposal will occur.

Important Notes

If the proposal is delayed, the student will continue to have yearly meetings with their dissertation committee.

Timeline

Beginning after your Qualifying Evaluation and continuing through graduation, you are expected to meet with your faculty committee annually to review your research progress, receive feedback, and discuss goals for the coming year.

Submission Deadline

The Annual Ph.D. Committee Meeting Progress Report may be submitted any time after your committee meeting but must be received no later than June 1 each year.

What You Need to Do

Each year, you are responsible for:

  • Scheduling and holding your annual committee meeting.
  • Preparing an Annual Ph.D. Committee Meeting Progress Report.
  • Obtaining signatures from your committee members.
  • Submitting the completed report to the Graduate Group Chair
  • Completing an annual Individual Development Plan (IDP).

Important Notes

  • Your Qualifying Evaluation satisfies your first annual committee meeting requirement.
  • If your thesis proposal is delayed beyond the expected timeline, you must continue holding annual committee meetings with your mentoring committee until your proposal is completed.
  • Annual committee meetings are required each year until you successfully defend your dissertation.

Forms & Resources

Timeline

During the spring semester of Year 3 students will begin going deeper with their research and start thinking about the next stages of their dissertation.

What You Need to Do

Go to Penn Provost PhD Students page and review the “Dissertation Formatting” section.

Forms & Resources

Years 4 – Completion

Dissertation & Graduation

Most students complete the Bioengineering Ph.D. program within five to six years (note, there is a 10 year program limit). The final stage of the program includes completing the dissertation, defending the research before the dissertation committee, and fulfilling all University graduation requirements.

Annually Through Completion

Timeline

At the start of each term it is recommended to review the Penn Provost Ph.D. Students page.

What You Need to Do

  • Review applicable calendars and deadlines.
  • Ensure alignment with Dissertation Formatting.
  • Review applicable checklists.

Forms & Resources

Timeline

Beginning after your Qualifying Evaluation and continuing through graduation, you are expected to meet with your faculty committee annually to review your research progress, receive feedback, and discuss goals for the coming year.

Submission Deadline

The Annual Ph.D. Committee Meeting Progress Report may be submitted any time after your committee meeting but must be received no later than June 1 each year.

What You Need to Do

Each year, you are responsible for:

  • Scheduling and holding your annual committee meeting.
  • Preparing an Annual Ph.D. Committee Meeting Progress Report.
  • Obtaining signatures from your committee members.
  • Submitting the completed report to the Graduate Group Chair
  • Completing an annual Individual Development Plan (IDP).

Important Notes

  • Your Qualifying Evaluation satisfies your first annual committee meeting requirement.
  • If your thesis proposal is delayed beyond the expected timeline, you must continue holding annual committee meetings with your mentoring committee until your proposal is completed.
  • Annual committee meetings are required each year until you successfully defend your dissertation.

Forms & Resources

Doctoral Dissertation Defense and Graduation

Timeline

When you and your advisor determine that your dissertation research is complete, and you will begin to plan to graduate and proceed with your dissertation defense.

What You Need to Do

  • Go to the Penn Provost Ph.D. Students section and carefully go through all content.
  • Take note of deadlines.
  • Download all checklists and complete them.
  • Submit necessary forms and applications.
  • Schedule deposit appointment.

Important Notes

  • The Penn Provost website provides the following resources:
    • Graduation
      • Graduation Calendars
      • PhD Graduation Checklist
    • Dissertation
      • Dissertation Deposit Information
      • Dissertation Formatting
      • Dissertation Copyright
      • Dissertation Embargo
      • ETD Administrator
    • Additional FAQs and links to systems are also available.
  • All forms required for depositing will be submitted electronically via BP Logix portal, and title page signatures are not required.
  • Your dissertation must be submitted electronically via ETD Administrator, a printed copy of the dissertation will not be required.

Forms & Resources

Timeline

When you and your advisor determine that your dissertation research is complete, you may begin preparing for your dissertation defense.

What You Need to Do

  • Work with your advisor and dissertation committee to schedule your dissertation defense.
  • Submit your Doctoral Dissertation Defense Announcement at least three weeks prior to your defense so it can be shared with the Bioengineering community.
  • Complete your dissertation defense, either in person or via remote conferencing.
  • After your defense, log in to the BP Logix portal, select Penn Graduate Forms, and choose “Dissertation Defense/Oral Exam” to initiate the electronic voting process for your dissertation committee.

Important Notes

  • Dissertation defenses may be held in person or remotely.
  • Committee approval is completed electronically through the BP Logix portal.
  • Your defense is considered complete once your committee has submitted its electronic vote and any required revisions have been addressed.

Forms & Resources

Timeline

To be eligible for exemption from tuition and fees in the final semester before graduation, the PhD candidate must have successfully defended their dissertation within the Provost’s “defend by and deposit by” deadlines of the final term they list below. All necessary course work and other requirements must be completed.

Important Notes

Please note the student MUST be registered for 9950 dissertation credit in their final term to request the waiver.

Forms & Resources

Timeline

Your stipend ends at graduation, either on your deposit date or if you are continuing to do work in a lab until the official graduation date and degree is posted.

Important Notes

  • You and your advisor should discuss and plan for an end date of work as a Ph.D. student and stipend.
  • Please notify the Penn Engineering Payroll Office of the date so that they are aware that your stipend should end. You must notify the payroll office so the stipend will end when you are no longer working in the lab as a Ph.D. student.

Forms & Resources

 

Scheduling Tools for Exam and Committee Meetings: